IL_7PWO_081

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CU*AUCG

Length

6 nucleotides

Bulged bases

7PWO|1|1|U|2362, 7PWO|1|1|C|2363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_081 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.0981

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

7PWO|1|1|C|2303
7PWO|1|1|U|2304
*
7PWO|1|1|A|2361
7PWO|1|1|U|2362
7PWO|1|1|C|2363
7PWO|1|1|G|2364

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain O2

Ribosomal protein L13a

Chain V2

Ribosomal protein L23