IL_7PWO_095

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UGUACG*CCGGG

Length

11 nucleotides

Bulged bases

7PWO|1|1|G|2672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_095 not in the Motif Atlas

Geometric match to IL_4V9F_099

Geometric discrepancy: 0.1173

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

7PWO|1|1|U|2639
7PWO|1|1|G|2640
7PWO|1|1|U|2641
7PWO|1|1|A|2642
7PWO|1|1|C|2643
7PWO|1|1|G|2644
*
7PWO|1|1|C|2670
7PWO|1|1|C|2671
7PWO|1|1|G|2672
7PWO|1|1|G|2673
7PWO|1|1|G|2674

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain W2

Ribosomal protein L24A

Chain d2

Ribosomal protein L31B