IL_7PWO_098

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GACGAAG*CGC

Length

10 nucleotides

Bulged bases

7PWO|1|2|G|44, 7PWO|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_098 not in the Motif Atlas

Geometric match to IL_8C3A_395

Geometric discrepancy: 0.13

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7PWO|1|2|G|41
7PWO|1|2|A|42
7PWO|1|2|C|43
7PWO|1|2|G|44
7PWO|1|2|A|45
7PWO|1|2|A|46
7PWO|1|2|G|47
*
7PWO|1|2|C|343
7PWO|1|2|G|344
7PWO|1|2|C|345

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain I1

40S ribosomal protein S8

Chain X1

Ribosomal protein S23