IL_7PWO_102

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CACC*GG

Length

6 nucleotides

Bulged bases

7PWO|1|2|A|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_102 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2326

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7PWO|1|2|C|100
7PWO|1|2|A|101
7PWO|1|2|C|102
7PWO|1|2|C|103
*
7PWO|1|2|G|214
7PWO|1|2|G|215

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain I1

40S ribosomal protein S8

Chain L1

SSU ribosomal protein S17P