IL_7PWO_108

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGU*AG

Length

6 nucleotides

Bulged bases

7PWO|1|2|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_108 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2414

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7PWO|1|2|C|232
7PWO|1|2|G|233
7PWO|1|2|G|234
7PWO|1|2|U|235
*
7PWO|1|2|A|257
7PWO|1|2|G|258

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain I1

40S ribosomal protein S8

Chain L1

SSU ribosomal protein S17P

Chain R2

Ribosomal protein L19