IL_7PWO_111

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCCAAUG*CGC(OMG)G

Length

12 nucleotides

Bulged bases

7PWO|1|2|G|369

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_111 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3276

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7PWO|1|2|C|354
7PWO|1|2|C|355
7PWO|1|2|C|356
7PWO|1|2|A|357
7PWO|1|2|A|358
7PWO|1|2|U|359
7PWO|1|2|G|360
*
7PWO|1|2|C|368
7PWO|1|2|G|369
7PWO|1|2|C|370
7PWO|1|2|OMG|371
7PWO|1|2|G|372

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain J1

Ribosomal protein S9

Chain Y1

Ribosomal protein S24