IL_7PWO_112

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_112 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1622

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7PWO|1|2|C|397
7PWO|1|2|A|398
7PWO|1|2|G|399
*
7PWO|1|2|C|411
7PWO|1|2|C|412
7PWO|1|2|G|413

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain J1

Ribosomal protein S9

Chain Y1

Ribosomal protein S24