IL_7PWO_120

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAAACG*CCGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_120 not in the Motif Atlas

Homologous match to IL_8C3A_433

Geometric discrepancy: 0.5147

The information below is about IL_8C3A_433

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83023.1

Basepair signature

cWW-R-L-R-L-R-L-L-L-L

Number of instances in this motif group

1

Unit IDs

7PWO|1|2|G|533
7PWO|1|2|G|534
7PWO|1|2|A|535
7PWO|1|2|A|536
7PWO|1|2|A|537
7PWO|1|2|C|538
7PWO|1|2|G|539
*
7PWO|1|2|C|567
7PWO|1|2|C|568
7PWO|1|2|G|569
7PWO|1|2|C|570

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain J1

Ribosomal protein S9