IL_7PWO_124

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GA*UGUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_124 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1559

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7PWO|1|2|G|617
7PWO|1|2|A|618
*
7PWO|1|2|U|714
7PWO|1|2|G|715
7PWO|1|2|U|716
7PWO|1|2|C|717

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain L1

SSU ribosomal protein S17P

Chain N1

Ribosomal protein S13

Chain W1

Ribosomal protein S15A

Chain b1

Ribosomal protein S27