IL_7PWO_140

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_140 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1727

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7PWO|1|2|U|915
7PWO|1|2|C|916
7PWO|1|2|U|917
*
7PWO|1|2|G|1168
7PWO|1|2|C|1169
7PWO|1|2|G|1170

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain Q1

Ribosomal protein S16

Chain S1

Ribosomal protein S18

Chain T1

Ribosomal protein S19e