IL_7PWO_146

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7PWO|1|2|C|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_146 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.1296

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

7PWO|1|2|U|1012
7PWO|1|2|G|1013
7PWO|1|2|C|1014
7PWO|1|2|A|1015
7PWO|1|2|U|1016
*
7PWO|1|2|A|1140
7PWO|1|2|U|1141
7PWO|1|2|G|1142

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain D1

Ribosomal protein S3

Chain K1

Ribosomal protein S10B

Chain U1

Ribosomal protein S20

Chain d1

Ribosomal protein S29A