IL_7PWO_148

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCG*CAGG

Length

7 nucleotides

Bulged bases

7PWO|1|2|A|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_148 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.2406

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7PWO|1|2|C|1019
7PWO|1|2|C|1020
7PWO|1|2|G|1021
*
7PWO|1|2|C|1130
7PWO|1|2|A|1131
7PWO|1|2|G|1132
7PWO|1|2|G|1133

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain C1

Ribosomal protein S2

Chain D1

Ribosomal protein S3

Chain U1

Ribosomal protein S20

Chain d1

Ribosomal protein S29A