IL_7PWO_153

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGACC*GCGCAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_153 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1549

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PWO|1|2|G|1228
7PWO|1|2|G|1229
7PWO|1|2|G|1230
7PWO|1|2|A|1231
7PWO|1|2|C|1232
7PWO|1|2|C|1233
*
7PWO|1|2|G|1252
7PWO|1|2|C|1253
7PWO|1|2|G|1254
7PWO|1|2|C|1255
7PWO|1|2|A|1256
7PWO|1|2|C|1257

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain S1

Ribosomal protein S18

Chain T1

Ribosomal protein S19e