IL_7PWO_155

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_155 not in the Motif Atlas

Geometric match to IL_5MWI_002

Geometric discrepancy: 0.1279

The information below is about IL_5MWI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7PWO|1|2|C|1277
7PWO|1|2|C|1278
7PWO|1|2|C|1279
*
7PWO|1|2|G|1289
7PWO|1|2|C|1290
7PWO|1|2|G|1291

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain Q1

Ribosomal protein S16

Chain T1

Ribosomal protein S19e

Chain U1

Ribosomal protein S20

Chain d1

Ribosomal protein S29A