IL_7PWO_159

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

7PWO|1|2|A|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_159 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2456

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7PWO|1|2|C|1330
7PWO|1|2|G|1331
7PWO|1|2|C|1332
*
7PWO|1|2|G|1407
7PWO|1|2|A|1408
7PWO|1|2|A|1409
7PWO|1|2|G|1410

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X1

Ribosomal protein S23

Chain n1

Ribosomal protein eL41