IL_7PWO_166

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_166 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.1798

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

7PWO|1|2|G|1360
7PWO|1|2|C|1361
7PWO|1|2|C|1362
*
7PWO|1|2|G|1378
7PWO|1|2|C|1379
7PWO|1|2|C|1380

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain G1

40S ribosomal protein S6

Chain I1

40S ribosomal protein S8

Chain W2

Ribosomal protein L24A