IL_7PWO_177

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_177 not in the Motif Atlas

Geometric match to IL_4WF9_121

Geometric discrepancy: 0.2526

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

7PWO|1|1|C|477
7PWO|1|1|G|478
7PWO|1|1|C|479
*
7PWO|1|1|G|488
7PWO|1|1|C|489
7PWO|1|1|G|490

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain L2

60S ribosomal protein L13

Chain a2

Ribosomal protein L27a

Chain b2

60S ribosomal protein L29