IL_7PZY_010

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GC*GACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_010 not in the Motif Atlas

Homologous match to IL_8C3A_011

Geometric discrepancy: 0.2229

The information below is about IL_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93525.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7PZY|1|1|G|176
7PZY|1|1|C|177
*
7PZY|1|1|G|238
7PZY|1|1|A|239
7PZY|1|1|C|240
7PZY|1|1|C|241

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AI

Ribosomal 60S subunit protein L35A

Chain AK

Ribosomal protein L37

Chain t

60S ribosomal protein L13