Motif IL_93525.1 Version IL_93525.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_045 | 4V9F | 0.6398 | 0 | Bulged stacked bases | 0 | LSU rRNA | A | 1286 | A | 1287 | U | 1288 | C | 1289 | * | G | 1269 | U | 1270 | cWW | cWW |
| 2 | IL_1KXK_001 | 1KXK | 0.8303 | 0 | A | Group II catalytic intron | U | 8 | A | 9 | U | 10 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
| 3 | IL_1MJI_003 | 1MJI | 0.4594 | 0 | Multiple bulged bases | D | 5S rRNA fragment | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 30 | C | 31 | cWW | cWW |
| 4 | IL_8C3A_011 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | G | 238 | A | 239 | C | 240 | C | 241 | * | G | 176 | C | 177 | cWW | cWW | |
| 5 | IL_8C3A_434 | 8C3A | 0.3551 | 0 | CM | SSU rRNA | G | 803 | U | 804 | U | 805 | A | 806 | * | U | 836 | C | 837 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUC*GU | 1 |
| UAUC*GG | 1 |
| GAAG*CC | 1 |
| GACC*GC | 1 |
| GUUA*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU* | 2 |
| AA* | 1 |
| AC* | 1 |
| UU* | 1 |
- Annotations
-
- (3)
- Multiple bulged bases (1)
- Bulged stacked bases (1)
- Basepair signature
- cWW-L-cWW-L
- Heat map statistics
- Min 0.36 | Avg 0.50 | Max 0.83
Coloring options: