IL_7PZY_045

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_045 not in the Motif Atlas

Geometric match to IL_2H1M_002

Geometric discrepancy: 0.2533

The information below is about IL_2H1M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7PZY|1|1|G|1017
7PZY|1|1|U|1018
7PZY|1|1|U|1019
*
7PZY|1|1|G|1025
7PZY|1|1|A|1026
7PZY|1|1|C|1027

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain i

HABP4_PAI-RBP1 domain-containing protein

Chain s

Ribosomal 60S subunit protein L11B