IL_7PZY_054
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7PZY|1|1|C|1192, 7PZY|1|1|A|1298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PZY_054 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0724
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7PZY|1|1|G|1190
7PZY|1|1|A|1191
7PZY|1|1|C|1192
7PZY|1|1|A|1193
7PZY|1|1|C|1194
7PZY|1|1|C|1195
7PZY|1|1|A|1196
7PZY|1|1|C|1197
7PZY|1|1|A|1198
7PZY|1|1|A|1199
7PZY|1|1|A|1200
7PZY|1|1|A|1201
*
7PZY|1|1|U|1295
7PZY|1|1|G|1296
7PZY|1|1|A|1297
7PZY|1|1|A|1298
7PZY|1|1|A|1299
7PZY|1|1|A|1300
7PZY|1|1|U|1301
7PZY|1|1|G|1302
7PZY|1|1|G|1303
7PZY|1|1|A|1304
7PZY|1|1|U|1305
7PZY|1|1|G|1306
7PZY|1|1|G|1307
7PZY|1|1|C|1308
7PZY|1|1|G|1309
7PZY|1|1|C|1310
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- Ribosomal 60S subunit protein L33A
- Chain AN
- Rpl40bp
- Chain k
- 60S ribosomal protein L3
- Chain o
- Ribosomal 60S subunit protein L7A
- Chain r
- Ribosomal 60S subunit protein L10
- Chain w
- Ribosomal 60S subunit protein L16A
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