IL_7PZY_150

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

7PZY|1|A|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_150 not in the Motif Atlas

Homologous match to IL_8C3A_392

Geometric discrepancy: 0.0619

The information below is about IL_8C3A_392

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

35

Unit IDs

7PZY|1|A|U|24
7PZY|1|A|C|25
7PZY|1|A|A|26
*
7PZY|1|A|U|598
7PZY|1|A|A|599

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain Y

Ribosomal 40S subunit protein S23B