IL_7PZY_177

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UACAGG*UUGUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_177 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.3621

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7PZY|1|A|U|480
7PZY|1|A|A|481
7PZY|1|A|C|482
7PZY|1|A|A|483
7PZY|1|A|G|484
7PZY|1|A|G|485
*
7PZY|1|A|U|499
7PZY|1|A|U|500
7PZY|1|A|G|501
7PZY|1|A|U|502
7PZY|1|A|A|503
7PZY|1|A|A|504

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain f

40S ribosomal protein S30