IL_7PZY_235

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_235 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.11

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7PZY|1|A|C|1665
7PZY|1|A|G|1666
7PZY|1|A|G|1667
7PZY|1|A|A|1668
7PZY|1|A|U|1669
*
7PZY|1|A|A|1706
7PZY|1|A|G|1707
7PZY|1|A|A|1708
7PZY|1|A|A|1709
7PZY|1|A|G|1710

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

Ribosomal 60S subunit protein L24A

Chain H

40S ribosomal protein S6

Chain J

40S ribosomal protein S8