IL_7PZY_242

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_242 not in the Motif Atlas

Homologous match to IL_8C3A_501

Geometric discrepancy: 0.1187

The information below is about IL_8C3A_501

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7PZY|1|A|U|515
7PZY|1|A|A|516
*
7PZY|1|A|U|531
7PZY|1|A|A|532
7PZY|1|A|A|533

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain Z

40S ribosomal protein S24