IL_58310.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_3RW6_003	3RW6	0.5621	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	38	A	40	U	41	*	A	20	G	21		cWW	tHS	cWW
2	IL_6CZR_155	6CZR	0.5256	2	Minor groove platform	1a	SSU rRNA	U	1181	G	1184	C	1185	*	G	1040	G	1041		cWW	ntHS	cWW
3	IL_5J7L_048	5J7L	0.4912	2	Minor groove platform	AA	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
4	IL_4LFB_045	4LFB	0.5084	2	Minor groove platform	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
5	IL_8C3A_460	8C3A	0.2154	0	Minor groove platform	CM	SSU rRNA	C	1291	U	1292	G	1293	*	C	1302	G	1303	ncSW	cWW		cWW
6	IL_8P9A_443	8P9A	0.2078	0	Minor groove platform	sR	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
7	IL_8C3A_396	8C3A	0.0000	0	Minor groove platform	CM	SSU rRNA	C	50	A	51	U	52	*	A	426	G	427		cWW	tHS	cWW
8	IL_8P9A_377	8P9A	0.0686	0	Minor groove platform	sR	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
9	IL_4LFB_004	4LFB	0.1108	0	Minor groove platform	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
10	IL_5J7L_004	5J7L	0.1421	0	Minor groove platform	AA	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
11	IL_6CZR_116	6CZR	0.1881	0	Minor groove platform	1a	SSU rRNA	C	55	A	56	U	57	*	A	352	G	353		cWW	ntHS	cWW
12	IL_4LFB_054	4LFB	0.2074	0	Minor groove platform	A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274		ncWW	tHS	cWW
13	IL_4UYK_001	4UYK	0.2437	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
14	IL_8C3A_501	8C3A	0.3193	0	Minor groove platform	CM	SSU rRNA	U	531	A	532	A	533	*	U	515	A	516		cWW	tHS	ncWW
15	IL_8P9A_401	8P9A	0.2247	0	Minor groove platform	sR	SSU rRNA	A	518	C	519	A	520	*	U	532	U	533		cWW	ntHS	cWW
16	IL_8C3A_422	8C3A	0.2494	0	Minor groove platform	CM	SSU rRNA	A	516	C	517	A	518	*	U	530	U	531		cWW		cWW
17	IL_9DFE_031	9DFE	0.2979	0	Minor groove platform	1A	LSU rRNA	U	877	A	878	G	879	*	C	898	A	899		cWW		cWW
18	IL_9DFE_073	9DFE	0.4408	1	Minor groove platform	1A	LSU rRNA	G	1846	A	1848	G	1849	*	C	1893	C	1894		cWW	ncWS	cWW
19	IL_1U9S_005	1U9S	0.5626	1	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	C	136	G	138	C	139	*	G	161	G	162		cWW	ntHS	cWW
20	IL_5J7L_314	5J7L	0.6001	1	Minor groove platform, major groove intercalation	DA	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903		cWW	ntHS	cWW
21	IL_4V9F_066	4V9F	0.6508	1	Minor groove platform, major groove intercalation	0	LSU rRNA	C	1893	A	1895	G	1896	*	C	1943	G	1944		cWW		cWW
22	IL_9DFE_071	9DFE	0.6682	1	Minor groove platform, major groove intercalation	1A	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903		cWW	ntHS	cWW
23	IL_8P9A_312	8P9A	0.6566	1	Minor groove platform, major groove intercalation	AR	LSU rRNA	C	2196	A	2198	G	2199	*	C	2245	G	2246		cWW		cWW
24	IL_7A0S_066	7A0S	0.6434	1	Minor groove platform, major groove intercalation	X	LSU rRNA	C	1829	G	1831	G	1832	*	C	1885	G	1886		cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAU*AG	5
CCGG*CG	3
UCAGC*GG	2
CUG*CG	2
CAC*GG	2
ACA*UU	2
CCAG*CG	2
UAAU*AG	1
UCAUC*GG	1
UAA*UA	1
UAG*CA	1
GAAG*CC	1
CAGC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	9
CG*	3
AA*	2
CAG*	2
U*	2
C*	2
CA*	2
CAU*	1
AG*	1

Release history

Release	3.93	3.94
Date	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_58310.2 Version IL_58310.2 of this group appears in releases 3.93 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_58310.2 Version IL_58310.2 of this group appears in releases 3.93 to 3.94

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Csv

Json