IL_7Q08_007

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_007 not in the Motif Atlas

Homologous match to IL_8C3A_008

Geometric discrepancy: 0.0848

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7Q08|1|1|C|124
7Q08|1|1|U|125
7Q08|1|1|G|126
*
7Q08|1|1|C|140
7Q08|1|1|C|141
7Q08|1|1|G|142

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

Ribosomal 60S subunit protein L25

Chain AI

Ribosomal 60S subunit protein L35A

Chain p

60S ribosomal protein L8

Chain v

Ribosomal protein L15