IL_7Q08_032

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_032 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0593

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7Q08|1|1|G|865
7Q08|1|1|G|866
7Q08|1|1|U|867
7Q08|1|1|U|868
*
7Q08|1|1|A|884
7Q08|1|1|U|885
7Q08|1|1|C|886

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

Ribosomal protein L37