IL_7Q08_067

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7Q08|1|1|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_067 not in the Motif Atlas

Homologous match to IL_8C3A_068

Geometric discrepancy: 0.1755

The information below is about IL_8C3A_068

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7Q08|1|1|G|1556
7Q08|1|1|U|1557
7Q08|1|1|G|1558
*
7Q08|1|1|C|1573
7Q08|1|1|C|1574

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

Ribosomal 60S subunit protein L25

Chain j

Ribosomal 60S subunit protein L2A

Chain p

60S ribosomal protein L8