IL_7Q08_116

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7Q08|1|1|A|2913, 7Q08|1|1|C|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_116 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0943

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7Q08|1|1|C|2853
7Q08|1|1|U|2854
*
7Q08|1|1|A|2912
7Q08|1|1|A|2913
7Q08|1|1|C|2914
7Q08|1|1|G|2915

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

Ribosomal 60S subunit protein L3

Chain w

Ribosomal 60S subunit protein L16A