IL_7Q08_118

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7Q08|1|1|A|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_118 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.0935

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7Q08|1|1|U|2863
7Q08|1|1|A|2864
*
7Q08|1|1|U|2881
7Q08|1|1|A|2882
7Q08|1|1|A|2883
7Q08|1|1|G|2884

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B

Chain w

Ribosomal 60S subunit protein L16A