IL_7Q08_140

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7Q08|1|1|U|3319, 7Q08|1|1|U|3320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_140 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.1957

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7Q08|1|1|C|3314
7Q08|1|1|C|3315
*
7Q08|1|1|G|3318
7Q08|1|1|U|3319
7Q08|1|1|U|3320
7Q08|1|1|G|3321

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8