IL_7Q08_164

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7Q08|1|A|U|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_164 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.1805

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7Q08|1|A|G|202
7Q08|1|A|U|203
7Q08|1|A|A|204
*
7Q08|1|A|U|257
7Q08|1|A|U|258
7Q08|1|A|U|259
7Q08|1|A|U|260
7Q08|1|A|C|261

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

40S ribosomal protein S8