IL_7Q08_192

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7Q08|1|A|U|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_192 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2563

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7Q08|1|A|G|853
7Q08|1|A|A|854
7Q08|1|A|C|855
*
7Q08|1|A|G|942
7Q08|1|A|U|943
7Q08|1|A|U|944
7Q08|1|A|U|945

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain O

Ribosomal 40S subunit protein S13

Chain c

40S ribosomal protein S27