IL_7Q08_210

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7Q08|1|A|U|1254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_210 not in the Motif Atlas

Geometric match to IL_4V88_449

Geometric discrepancy: 0.2032

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7Q08|1|A|G|1253
7Q08|1|A|U|1254
7Q08|1|A|G|1255
*
7Q08|1|A|C|1426
7Q08|1|A|C|1427

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal 40S subunit protein S10A

Chain e

Ribosomal 40S subunit protein S29A

Chain g

Ubiquitin-ribosomal 40S subunit protein S31 fusion protein