IL_7Q08_211

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7Q08|1|A|C|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_211 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.2203

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

7Q08|1|A|U|1257
7Q08|1|A|G|1258
7Q08|1|A|C|1259
7Q08|1|A|A|1260
7Q08|1|A|U|1261
*
7Q08|1|A|A|1422
7Q08|1|A|U|1423
7Q08|1|A|G|1424

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal 40S subunit protein S3

Chain L

Ribosomal 40S subunit protein S10A

Chain V

Ribosomal 40S subunit protein S20

Chain e

Ribosomal 40S subunit protein S29A

Chain g

Ubiquitin-ribosomal 40S subunit protein S31 fusion protein

Chain i

HABP4_PAI-RBP1 domain-containing protein