3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
GGGAUAG*CUUCAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Q08_223 not in the Motif Atlas
Homologous match to IL_8C3A_469
Geometric discrepancy: 0.1403
The information below is about IL_8C3A_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10092.1
Basepair signature
cWW-tSH-tSH-L-R-cWW-L-R-cWW
Number of instances in this motif group
1

Unit IDs

7Q08|1|A|G|1527
7Q08|1|A|G|1528
7Q08|1|A|G|1529
7Q08|1|A|A|1530
7Q08|1|A|U|1531
7Q08|1|A|A|1532
7Q08|1|A|G|1533
*
7Q08|1|A|C|1552
7Q08|1|A|U|1553
7Q08|1|A|U|1554
7Q08|1|A|C|1555
7Q08|1|A|A|1556
7Q08|1|A|A|1557
7Q08|1|A|C|1558

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain T
Ribosomal 40S subunit protein S18B
Chain U
Ribosomal 40S subunit protein S19A

Coloring options:


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