IL_7Q0F_107

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7Q0F|1|1|U|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0F_107 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0812

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7Q0F|1|1|G|2800
7Q0F|1|1|U|2801
7Q0F|1|1|G|2802
*
7Q0F|1|1|U|2830
7Q0F|1|1|U|2831
7Q0F|1|1|U|2832
7Q0F|1|1|U|2833
7Q0F|1|1|U|2834

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain k

Ribosomal 60S subunit protein L3

Chain r

Ribosomal 60S subunit protein L10