IL_7Q0F_155

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7Q0F|1|A|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0F_155 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1989

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7Q0F|1|A|G|141
7Q0F|1|A|G|142
7Q0F|1|A|A|143
7Q0F|1|A|U|144
7Q0F|1|A|A|145
7Q0F|1|A|A|146
7Q0F|1|A|C|147
*
7Q0F|1|A|G|163
7Q0F|1|A|C|164
7Q0F|1|A|U|165
7Q0F|1|A|A|166
7Q0F|1|A|A|167
7Q0F|1|A|U|168
7Q0F|1|A|A|169
7Q0F|1|A|C|170

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

40S ribosomal protein S24