IL_7Q0F_172

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UACAGG*UUGUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0F_172 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3505

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7Q0F|1|A|U|480
7Q0F|1|A|A|481
7Q0F|1|A|C|482
7Q0F|1|A|A|483
7Q0F|1|A|G|484
7Q0F|1|A|G|485
*
7Q0F|1|A|U|499
7Q0F|1|A|U|500
7Q0F|1|A|G|501
7Q0F|1|A|U|502
7Q0F|1|A|A|503
7Q0F|1|A|A|504

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain f

40S ribosomal protein S30