IL_7Q0F_222

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0F_222 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1124

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7Q0F|1|A|G|1625
7Q0F|1|A|C|1626
7Q0F|1|A|C|1627
7Q0F|1|A|C|1628
*
7Q0F|1|A|G|1747
7Q0F|1|A|U|1748
7Q0F|1|A|A|1749
7Q0F|1|A|A|1750
7Q0F|1|A|C|1751

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein eL41

Chain i

HABP4_PAI-RBP1 domain-containing protein