IL_7Q0P_114

3D structure

PDB id

7Q0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with anisomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7Q0P|1|1|G|2917, 7Q0P|1|1|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0P_114 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0839

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7Q0P|1|1|C|2851
7Q0P|1|1|U|2852
7Q0P|1|1|C|2853
*
7Q0P|1|1|G|2915
7Q0P|1|1|U|2916
7Q0P|1|1|G|2917
7Q0P|1|1|A|2918
7Q0P|1|1|G|2919

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

Ribosomal 60S subunit protein L3