IL_7Q0P_177

3D structure

PDB id

7Q0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with anisomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UACAGG*UUGUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0P_177 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.3621

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7Q0P|1|A|U|480
7Q0P|1|A|A|481
7Q0P|1|A|C|482
7Q0P|1|A|A|483
7Q0P|1|A|G|484
7Q0P|1|A|G|485
*
7Q0P|1|A|U|499
7Q0P|1|A|U|500
7Q0P|1|A|G|501
7Q0P|1|A|U|502
7Q0P|1|A|A|503
7Q0P|1|A|A|504

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain f

40S ribosomal protein S30