IL_7Q0R_056
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 7Q0R|1|1|A|1217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_056 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2625
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7Q0R|1|1|U|1214
7Q0R|1|1|C|1215
7Q0R|1|1|U|1216
7Q0R|1|1|A|1217
7Q0R|1|1|G|1218
7Q0R|1|1|A|1219
7Q0R|1|1|C|1220
7Q0R|1|1|A|1221
7Q0R|1|1|G|1222
*
7Q0R|1|1|C|1279
7Q0R|1|1|C|1280
7Q0R|1|1|G|1281
7Q0R|1|1|A|1282
7Q0R|1|1|A|1283
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain AN
- Rpl40bp
Coloring options: