IL_7Q0R_209
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AUAAGGAUUGA*UCUUGAUUU
- Length
- 20 nucleotides
- Bulged bases
- 7Q0R|1|A|G|1213, 7Q0R|1|A|U|1242
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_209 not in the Motif Atlas
- Homologous match to IL_8C3A_453
- Geometric discrepancy: 0.0772
- The information below is about IL_8C3A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38882.1
- Basepair signature
- cWW-L-R-tSS-R-L-tSH-R-L-cWW-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7Q0R|1|A|A|1209
7Q0R|1|A|U|1210
7Q0R|1|A|A|1211
7Q0R|1|A|A|1212
7Q0R|1|A|G|1213
7Q0R|1|A|G|1214
7Q0R|1|A|A|1215
7Q0R|1|A|U|1216
7Q0R|1|A|U|1217
7Q0R|1|A|G|1218
7Q0R|1|A|A|1219
*
7Q0R|1|A|U|1236
7Q0R|1|A|C|1237
7Q0R|1|A|U|1238
7Q0R|1|A|U|1239
7Q0R|1|A|G|1240
7Q0R|1|A|A|1241
7Q0R|1|A|U|1242
7Q0R|1|A|U|1243
7Q0R|1|A|U|1244
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal 40S subunit protein S10A
- Chain N
- 40S ribosomal protein S12
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
Coloring options: