IL_7Q0R_221
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_221 not in the Motif Atlas
- Geometric match to IL_4V88_459
- Geometric discrepancy: 0.0885
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7Q0R|1|A|G|1466
7Q0R|1|A|C|1467
7Q0R|1|A|C|1468
7Q0R|1|A|A|1469
7Q0R|1|A|G|1470
7Q0R|1|A|C|1471
7Q0R|1|A|G|1472
7Q0R|1|A|A|1473
*
7Q0R|1|A|U|1506
7Q0R|1|A|U|1507
7Q0R|1|A|G|1508
7Q0R|1|A|U|1509
7Q0R|1|A|G|1510
7Q0R|1|A|A|1511
7Q0R|1|A|A|1512
7Q0R|1|A|A|1513
7Q0R|1|A|C|1514
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal 40S subunit protein S3
- Chain G
- Ribosomal 40S subunit protein S5
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain U
- Ribosomal 40S subunit protein S19A
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
Coloring options: