IL_7Q4K_014

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7Q4K|1|AA|U|244, 7Q4K|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1053

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7Q4K|1|AA|G|242
7Q4K|1|AA|A|243
7Q4K|1|AA|U|244
7Q4K|1|AA|U|245
7Q4K|1|AA|A|246
7Q4K|1|AA|G|247
*
7Q4K|1|AA|C|277
7Q4K|1|AA|G|278
7Q4K|1|AA|A|279
7Q4K|1|AA|C|280
7Q4K|1|AA|G|281
7Q4K|1|AA|A|282
7Q4K|1|AA|U|283
7Q4K|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17