IL_7Q4K_024

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUA*UUGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_024 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2907

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7Q4K|1|AA|G|455
7Q4K|1|AA|A|456
7Q4K|1|AA|G|457
7Q4K|1|AA|U|458
7Q4K|1|AA|A|459
*
7Q4K|1|AA|U|472
7Q4K|1|AA|U|473
7Q4K|1|AA|G|474
7Q4K|1|AA|C|475
7Q4K|1|AA|U|476

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16