IL_7Q4K_034

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

7Q4K|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_034 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0757

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7Q4K|1|AA|U|662
7Q4K|1|AA|A|663
7Q4K|1|AA|G|664
7Q4K|1|AA|A|665
7Q4K|1|AA|G|666
*
7Q4K|1|AA|U|740
7Q4K|1|AA|G|741
7Q4K|1|AA|G|742
7Q4K|1|AA|A|743

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18