IL_7Q4K_039

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_039 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7Q4K|1|AA|G|887
7Q4K|1|AA|G|888
7Q4K|1|AA|A|889
7Q4K|1|AA|G|890
7Q4K|1|AA|U|891
7Q4K|1|AA|A|892
7Q4K|1|AA|C|893
7Q4K|1|AA|G|894
*
7Q4K|1|AA|U|905
7Q4K|1|AA|A|906
7Q4K|1|AA|A|907
7Q4K|1|AA|A|908
7Q4K|1|AA|A|909
7Q4K|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12